DNACLUST is a tool for clustering millions of short DNA sequences. DNACLUST is free software.

Example of an exact clustering of points on a plane.

Linux 32-bit and 64-bit binaries can be downloaded from the files section of the sourceforge project page.

Source code of the latest development version can be downloaded from the Subversion repository. The syntax using the command line Subversion client is shown below:

    svn checkout https://dnaclust.svn.sourceforge.net/svnroot/dnaclust/trunk dnaclust

Please read the included README file.

The manual is also available online.